Posters

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In alphabetical order by last name

1. Monica Arniella (Nielsen Lab), Computational Biology 
Title: Improving viral base calling using phylogenetic information

2. Alan Aw (Song/Ioannidis Labs), Statistics
Title: The impact of stability considerations on statistical fine-mapping

3. Gonzalo Benegas (Song Lab), Computational Biology 
Title: DNA language models are powerful zero-shot predictors of non-coding variant effects

4. Prakruthi Burra (Lareau Lab), Computational Biology 
Title: Identifying cell-state associated alternative splicing events and their co-regulation

5. Salwan Butrus (Shekhar Lab), Chemical and Biomolecular Engineering
Title: Vision-dependent specification of cell types and function in the developing cortex

6. Fiona Callahan (Nielsen Lab), Computational Biology 
Title: Methods comparison for ecological community modeling from ancient eDNA data

7. Francisca Catalan (Sudmant Lab), Integrative Biology
Title: Dissecting the role of endogenous retroviruses in placental diversification and evolution

8. Yun Deng (Yosef/Song Labs), Computational Biology 
Title: A new framework for efficiently inferring ancestral recombination graphs

9. Zhongyan Gong (Bautista Labs), Helen Wills Neuroscience Institute
Title: SARS-CoV-2 Main Protease Activates Trigeminal Ganglia Neurons and Triggers Inflammations

10. Josh Hahn (Shekhar Lab), Chemical and Biomolecular Engineering
Title: Evolutionary transcriptomics of neuronal diversity in the vertebrate retina

11. Alma Halgren (Sudmant Lab), Integrative Biology
Title: Diversity and Recent Selection on Amylase Structural Haplotypes in Human Populations

12. Sarah Johnson (Moorjani Lab), Computational Biology 
Title: Evaluation of Fstatistics performance on simulated samples with varying levels of missing data

13. Pierre Joubert (Krasileva Lab), Plant and Microbial Biology
Title: Genomic contexts of presence absence variation in the rice and wheat blast fungus

14. Pooja Kathail (Ioannidis/Ye Labs), Computational Biology 
Title: Assessing the utility of genomic deep learning models for disease-relevant variant effect prediction

15. Yun-Jen (Jennifer) Lin (Brenner Lab), Molecular and Cell Biology
Title: Is expression or splicing more important in an RNA-seq experiment?

16. Johnathan Lo (Sudmant/Boots Labs), Computational Biology 
Title: Fast Evolution in host parasite dynamics

17. Nicolas Lou (Sudmant Lab), Integrative Biology
Title: The genomic basis of rapid diversification and the evolution of long lifespan in rockfish species

18. Jeremy Marcus (Streets Lab), Computational Biology 
Title: Mapping protein-DNA interactions with DiMeLo-seq

19. Sergio Mares (Ioannidis/Costello Labs), Computational Biology 
Title: Fusion gene landscapes and regulation in tumor evolution

20. Anne Nakamoto (Krasileva Lab), Plant and Microbial Biology
Title: Analyses of lineage-specific transposable element expansions in Magnaporthe oryzae reveal evidence of genomic region exchange between rice and wheat pathotypes

21. Kushal Nimkar (Shekhar Lab), Chemical and Biomolecular Engineering
Title: Single cell spatial transcriptomics of retinal ganglion cell types in the mouse

22. Hungert Nisonoff (Listgarten Lab), Computational Biology
Title: Machine Learning-Designated Recombination Libraries for Large Scale Enzyme Engineering

23. Graham Northrup (Boots/Lewnard Labs), Computational Biology 
Title: Spatial Simulation of Host Evolution

24. Daniil Prigozhin (Krasileva Lab), Lawrence Berkeley National Laboratory
Title: Predicting Target Binding Sites in Plant Immune Receptors

25. Eyes Robson (Ioannidis Lab), Computational Biology
Title: Benchmarking Genomic AI with GUANinE

26. Michal Rozenwald (Streets/Urnov Labs), Computational Biology
Title: Connecting Epigenomic States to Human Gene Output by Integrating Epiediting With DiMeLo-Seq.

27. Helen Sakharova (Lareau Lab), Computational Biology 
Title: Rules for Synonymous Codon Choice: When do clusters of suboptimal codons matter?

28. Sahil Shah (Glaunsinger/Lareau Labs), Computational Biology 
Title: Stress-induced retrotransposon activation drives mRNA isoform switching

29. Samvardhini Sridharan (Sudmant Lab), Molecular and Cell Biology
Title: The impact of structural variation on mutation load, selection, and evolution at the 17q21.31 inversion locus

30. Chandler Sutherland (Krasileva Lab), Plant and Microbial Biology
Title: Genomic Features of Rapidly Evolving Plant Immune Receptors

31. Andrew Vaughn (Nielsen Lab), Computational Biology 
Title: Bayesian inference of admixture graphs on Native American and Arctic populations

32. Galen Xing (Marson Lab), Computational Biology 
Title: Designing CRISPR guide libraries targeting non-coding regions in Regulatory T (Tregs) cells

33. Yulin Zhang (Moorjani Lab), Computational Biology 
Title: Recovering signatures of ghost admixture using ancestral recombination graphs